fix: reconcile pre-exclusion .agents installs on claude and codex home upgrades

scripts/install-apply.js

@@ -132,6 +132,13 @@ function printHumanPlan(plan, dryRun) {
     }
   }
 
+  if (Array.isArray(plan.reconciledExcludedPaths) && plan.reconciledExcludedPaths.length > 0) {
+    console.log('\nReconciled excluded paths:');
+    for (const removedPath of plan.reconciledExcludedPaths) {
+      console.log(`- removed ${removedPath}`);
+    }
+  }
+
   if (!dryRun) {
     console.log(`\nDone. Install-state written to ${plan.installStatePath}`);
   }