docs: add custom hooks for rendering jupyter notebooks (#2067)

This commit is contained in:
Vadym Barda
2024-10-09 18:49:54 -04:00
committed by GitHub
parent fe110ae145
commit db0f508269
36 changed files with 1064 additions and 131 deletions
+1 -1
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@@ -24,7 +24,7 @@ export -f execute_notebook
# Check if custom notebook paths are provided
if [ $# -gt 0 ]; then
notebooks="$@"
notebooks=$(echo "$@" | tr ' ' '\n' | grep -vFf <(echo "$SKIP_NOTEBOOKS"))
else
# Find all notebooks and filter out those in the skip list
notebooks=$(find docs/docs/tutorials docs/docs/how-tos -name "*.ipynb" | grep -v ".ipynb_checkpoints" | grep -vFf <(echo "$SKIP_NOTEBOOKS"))
@@ -0,0 +1,246 @@
import importlib
import inspect
import logging
import os
import re
from typing import List, Literal, Optional
from typing_extensions import TypedDict
import nbformat
from nbconvert.preprocessors import Preprocessor
logging.basicConfig(level=logging.INFO)
logger = logging.getLogger(__name__)
# Base URL for all class documentation
_LANGCHAIN_API_REFERENCE = "https://python.langchain.com/api_reference/"
_LANGGRAPH_API_REFERENCE = "https://langchain-ai.github.io/langgraph/reference/"
# (alias/re-exported modules, source module, class, docs namespace)
MANUAL_API_REFERENCES_LANGGRAPH = [
(
["langgraph.prebuilt"],
"langgraph.prebuilt.chat_agent_executor",
"create_react_agent",
"prebuilt",
),
(["langgraph.prebuilt"], "langgraph.prebuilt.tool_node", "ToolNode", "prebuilt"),
(
["langgraph.prebuilt"],
"langgraph.prebuilt.tool_node",
"tools_condition",
"prebuilt",
),
(
["langgraph.prebuilt"],
"langgraph.prebuilt.tool_node",
"InjectedState",
"prebuilt",
),
# Graph
(["langgraph.graph"], "langgraph.graph.message", "add_messages", "graphs"),
(["langgraph.graph"], "langgraph.graph.state", "StateGraph", "graphs"),
(["langgraph.graph"], "langgraph.graph.state", "CompiledStateGraph", "graphs"),
([], "langgraph.types", "StreamMode", "types"),
(["langgraph.graph"], "langgraph.constants", "START", "constants"),
(["langgraph.graph"], "langgraph.constants", "END", "constants"),
(["langgraph.constants"], "langgraph.types", "Send", "types"),
(["langgraph.constants"], "langgraph.types", "Interrupt", "types"),
([], "langgraph.types", "RetryPolicy", "types"),
([], "langgraph.checkpoint.base", "Checkpoint", "checkpoints"),
([], "langgraph.checkpoint.base", "CheckpointMetadata", "checkpoints"),
([], "langgraph.checkpoint.base", "BaseCheckpointSaver", "checkpoints"),
([], "langgraph.checkpoint.base", "SerializerProtocol", "checkpoints"),
([], "langgraph.checkpoint.serde.jsonplus", "JsonPlusSerializer", "checkpoints"),
([], "langgraph.checkpoint.memory", "MemorySaver", "checkpoints"),
([], "langgraph.checkpoint.sqlite.aio", "AsyncSqliteSaver", "checkpoints"),
([], "langgraph.checkpoint.sqlite", "SqliteSaver", "checkpoints"),
([], "langgraph.checkpoint.postgres.aio", "AsyncPostgresSaver", "checkpoints"),
([], "langgraph.checkpoint.postgres", "PostgresSaver", "checkpoints"),
]
WELL_KNOWN_LANGGRAPH_OBJECTS = {
(module_, class_): (source_module, namespace)
for (modules, source_module, class_, namespace) in MANUAL_API_REFERENCES_LANGGRAPH
for module_ in modules + [source_module]
}
def _make_regular_expression(pkg_prefix: str) -> re.Pattern:
if not pkg_prefix.isidentifier():
raise ValueError(f"Invalid package prefix: {pkg_prefix}")
return re.compile(
r"from\s+(" + pkg_prefix + "(?:_\w+)?(?:\.\w+)*?)\s+import\s+"
r"((?:\w+(?:,\s*)?)*" # Match zero or more words separated by a comma+optional ws
r"(?:\s*\(.*?\))?)", # Match optional parentheses block
re.DOTALL, # Match newlines as well
)
# Regular expression to match langchain import lines
_IMPORT_LANGCHAIN_RE = _make_regular_expression("langchain")
_IMPORT_LANGGRAPH_RE = _make_regular_expression("langgraph")
def _get_full_module_name(module_path, class_name) -> Optional[str]:
"""Get full module name using inspect"""
try:
module = importlib.import_module(module_path)
class_ = getattr(module, class_name)
module = inspect.getmodule(class_)
if module is None:
# For constants, inspect.getmodule() might return None
# In this case, we'll return the original module_path
return module_path
return module.__name__
except AttributeError as e:
logger.warning(f"Could not find module for {class_name}, {e}")
return None
except ImportError as e:
logger.warning(f"Failed to load for class {class_name}, {e}")
return None
def _get_doc_title(data: str, file_name: str) -> str:
try:
return re.findall(r"^#\s*(.*)", data, re.MULTILINE)[0]
except IndexError:
pass
# Parse the rst-style titles
try:
return re.findall(r"^(.*)\n=+\n", data, re.MULTILINE)[0]
except IndexError:
return file_name
class ImportInformation(TypedDict):
imported: str # imported class name
source: str # module path
docs: str # URL to the documentation
title: str # Title of the document
def _get_imports(
code: str, doc_title: str, package_ecosystem: Literal["langchain", "langgraph"]
) -> List[ImportInformation]:
"""Get imports from the given code block.
Args:
code: Python code block from which to extract imports
doc_title: Title of the document
package_ecosystem: "langchain" or "langgraph". The two live in different
repositories and have separate documentation sites.
Returns:
List of import information for the given code block
"""
imports = []
if package_ecosystem == "langchain":
pattern = _IMPORT_LANGCHAIN_RE
elif package_ecosystem == "langgraph":
pattern = _IMPORT_LANGGRAPH_RE
else:
raise ValueError(f"Invalid package ecosystem: {package_ecosystem}")
for import_match in pattern.finditer(code):
module = import_match.group(1)
if "pydantic_v1" in module:
continue
imports_str = (
import_match.group(2).replace("(\n", "").replace("\n)", "")
) # Handle newlines within parentheses
# remove any newline and spaces, then split by comma
imported_classes = [
imp.strip()
for imp in re.split(r",\s*", imports_str.replace("\n", ""))
if imp.strip()
]
for class_name in imported_classes:
module_path = _get_full_module_name(module, class_name)
if not module_path:
continue
if len(module_path.split(".")) < 2:
continue
if package_ecosystem == "langchain":
pkg = module_path.split(".")[0].replace("langchain_", "")
top_level_mod = module_path.split(".")[1]
url = (
_LANGCHAIN_API_REFERENCE
+ pkg
+ "/"
+ top_level_mod
+ "/"
+ module_path
+ "."
+ class_name
+ ".html"
)
elif package_ecosystem == "langgraph":
if (module, class_name) not in WELL_KNOWN_LANGGRAPH_OBJECTS:
# Likely not documented yet
continue
source_module, namespace = WELL_KNOWN_LANGGRAPH_OBJECTS[
(module, class_name)
]
url = (
_LANGGRAPH_API_REFERENCE
+ namespace
+ "/#"
+ source_module
+ "."
+ class_name
)
else:
raise ValueError(f"Invalid package ecosystem: {package_ecosystem}")
# Add the import information to our list
imports.append(
{
"imported": class_name,
"source": module,
"docs": url,
"title": doc_title,
}
)
return imports
class ImportPreprocessor(Preprocessor):
"""A preprocessor to replace imports in each Python code cell with links to their
documentation and append the import info in a comment."""
def preprocess(self, nb, resources):
self.all_imports = []
file_name = os.path.basename(resources.get("metadata", {}).get("name", ""))
_DOC_TITLE = _get_doc_title(nb.cells[0].source, file_name)
cells = []
for cell in nb.cells:
if cell.cell_type == "code":
cells.append(cell)
imports = _get_imports(
cell.source, _DOC_TITLE, "langchain"
) + _get_imports(cell.source, _DOC_TITLE, "langgraph")
if not imports:
continue
cells.append(
nbformat.v4.new_markdown_cell(
source=f"""
<div>
<b>API Reference:</b>
{' | '.join(f'<a href="{imp["docs"]}">{imp["imported"]}</a>' for imp in imports)}
</div>
"""
)
)
else:
cells.append(cell)
nb.cells = cells
return nb, resources
+126
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@@ -0,0 +1,126 @@
import os
import re
from pathlib import Path
import nbformat
from nbconvert.exporters import MarkdownExporter
from nbconvert.preprocessors import Preprocessor
from generate_api_reference_links import ImportPreprocessor
class EscapePreprocessor(Preprocessor):
def preprocess_cell(self, cell, resources, cell_index):
if cell.cell_type == "markdown":
# rewrite markdown links to html links (excluding image links)
cell.source = re.sub(
r"(?<!!)\[([^\]]*)\]\((?![^\)]*//)([^)]*)(?:\.ipynb)?\)",
r'<a href="\2">\1</a>',
cell.source,
)
# Fix image paths in <img> tags
cell.source = re.sub(
r'<img\s+src="\.?/img/([^"]+)"', r'<img src="../img/\1"', cell.source
)
elif cell.cell_type == "code":
# escape ``` in code
cell.source = cell.source.replace("```", r"\`\`\`")
# escape ``` in output
if "outputs" in cell:
filter_out = set()
for i, output in enumerate(cell["outputs"]):
if "text" in output:
if not output["text"].strip():
filter_out.add(i)
continue
value = output["text"].replace("```", r"\`\`\`")
# handle a funky case w/ references in text
value = re.sub(r"\[(\d+)\](?=\[(\d+)\])", r"[\1]\\", value)
output["text"] = value
elif "data" in output:
for key, value in output["data"].items():
if isinstance(value, str):
value = value.replace("```", r"\`\`\`")
# handle a funky case w/ references in text
output["data"][key] = re.sub(
r"\[(\d+)\](?=\[(\d+)\])", r"[\1]\\", value
)
cell["outputs"] = [
output
for i, output in enumerate(cell["outputs"])
if i not in filter_out
]
return cell, resources
class ExtractAttachmentsPreprocessor(Preprocessor):
"""
Extracts all of the outputs from the notebook file. The extracted
outputs are returned in the 'resources' dictionary.
"""
def preprocess_cell(self, cell, resources, cell_index):
"""
Apply a transformation on each cell,
Parameters
----------
cell : NotebookNode cell
Notebook cell being processed
resources : dictionary
Additional resources used in the conversion process. Allows
preprocessors to pass variables into the Jinja engine.
cell_index : int
Index of the cell being processed (see base.py)
"""
# Get files directory if it has been specified
# Make sure outputs key exists
if not isinstance(resources["outputs"], dict):
resources["outputs"] = {}
# Loop through all of the attachments in the cell
for name, attach in cell.get("attachments", {}).items():
for mime, data in attach.items():
if mime not in {
"image/png",
"image/jpeg",
"image/svg+xml",
"application/pdf",
}:
continue
# attachments are pre-rendered. Only replace markdown-formatted
# images with the following logic
attach_str = f"({name})"
if attach_str in cell.source:
data = f"(data:{mime};base64,{data})"
cell.source = cell.source.replace(attach_str, data)
return cell, resources
exporter = MarkdownExporter(
preprocessors=[
EscapePreprocessor,
ExtractAttachmentsPreprocessor,
ImportPreprocessor,
],
template_name="mdoutput",
extra_template_basedirs=[
os.path.join(os.path.dirname(__file__), "notebook_convert_templates")
],
)
def convert_notebook(
notebook_path: Path,
) -> Path:
with open(notebook_path) as f:
nb = nbformat.read(f, as_version=4)
body, _ = exporter.from_notebook_node(nb)
return body
@@ -0,0 +1,5 @@
{
"mimetypes": {
"text/markdown": true
}
}
@@ -0,0 +1,33 @@
{% extends 'markdown/index.md.j2' %}
{%- block traceback_line -%}
```output
{{ line.rstrip() | strip_ansi }}
```
{%- endblock traceback_line -%}
{%- block stream -%}
```output
{{ output.text.rstrip() }}
```
{%- endblock stream -%}
{%- block data_text scoped -%}
```output
{{ output.data['text/plain'].rstrip() }}
```
{%- endblock data_text -%}
{%- block data_html scoped -%}
```html
{{ output.data['text/html'] | safe }}
```
{%- endblock data_html -%}
{%- block data_jpg scoped -%}
![](data:image/jpg;base64,{{ output.data['image/jpeg'] }})
{%- endblock data_jpg -%}
{%- block data_png scoped -%}
![](data:image/png;base64,{{ output.data['image/png'] }})
{%- endblock data_png -%}
+40
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@@ -0,0 +1,40 @@
import logging
from typing import Any, Dict
from mkdocs.structure.pages import Page
from mkdocs.structure.files import Files, File
from notebook_convert import convert_notebook
logger = logging.getLogger(__name__)
logging.basicConfig()
logger.setLevel(logging.INFO)
class NotebookFile(File):
def is_documentation_page(self):
return True
def on_files(files: Files, **kwargs: Dict[str, Any]):
new_files = Files([])
for file in files:
if file.src_path.endswith(".ipynb"):
new_file = NotebookFile(
path=file.src_path,
src_dir=file.src_dir,
dest_dir=file.dest_dir,
use_directory_urls=file.use_directory_urls,
)
new_files.append(new_file)
else:
new_files.append(file)
return new_files
def on_page_markdown(markdown: str, page: Page, **kwargs: Dict[str, Any]):
if page.file.src_path.endswith(".ipynb"):
logger.info("Processing Jupyter notebook: %s", page.file.src_path)
body = convert_notebook(page.file.abs_src_path)
return body
return markdown